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Insulin receptor kinase complexed with an inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P14 pdb entry 1P14
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295 0.1 M MOPS, 1.0 M Na3citrate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.61 52.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.092 α = 90 b = 69.522 β = 90 c = 89.961 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE MAR scanner 345 mm plate mirrors 2007-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 55.05 86.82 0.059 24 3.9 15718 15718 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.25 48 0.2 7.3 3.8 638
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1P14 2.2 55.05 2 15718 15718 851 86.82 0.21378 0.21063 0.2099 0.2738 0.2683 RANDOM 31.634
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 -0.27 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.931 r_dihedral_angle_4_deg 18.766 r_dihedral_angle_3_deg 13.501 r_dihedral_angle_1_deg 5.607 r_scangle_it 1.983 r_scbond_it 1.261 r_angle_refined_deg 1.26 r_mcangle_it 0.8 r_mcbond_it 0.472 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.931 r_dihedral_angle_4_deg 18.766 r_dihedral_angle_3_deg 13.501 r_dihedral_angle_1_deg 5.607 r_scangle_it 1.983 r_scbond_it 1.261 r_angle_refined_deg 1.26 r_mcangle_it 0.8 r_mcbond_it 0.472 r_nbtor_refined 0.304 r_nbd_refined 0.184 r_xyhbond_nbd_refined 0.144 r_symmetry_vdw_refined 0.128 r_symmetry_hbond_refined 0.094 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2346 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 38
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling