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Crystal structure of IBV X-domain at pH 8.5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 285.15 30% PEG 4000, 0.1 M TRIS PH 8.5, 0.2 M MAGENSIUM CHLORIDE, temperature 285.15K
Crystal Properties Matthews coefficient Solvent content 2.16 43.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.207 α = 90 b = 79.811 β = 90 c = 99.741 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2007-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 24.82 97.9 0.103 18.371 7.1 22201 15.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.64 97.1 0.244 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 24.82 21036 22172 1136 97.7 0.171 0.169 0.1748 0.203 0.2092 RANDOM 14.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 -0.41 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.529 r_dihedral_angle_3_deg 10.96 r_dihedral_angle_4_deg 9.611 r_dihedral_angle_1_deg 6.137 r_scangle_it 2.881 r_scbond_it 2.116 r_angle_refined_deg 1.349 r_mcangle_it 1.23 r_mcbond_it 1.099 r_angle_other_deg 0.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.529 r_dihedral_angle_3_deg 10.96 r_dihedral_angle_4_deg 9.611 r_dihedral_angle_1_deg 6.137 r_scangle_it 2.881 r_scbond_it 2.116 r_angle_refined_deg 1.349 r_mcangle_it 1.23 r_mcbond_it 1.099 r_angle_other_deg 0.884 r_nbd_refined 0.212 r_mcbond_other 0.209 r_nbtor_refined 0.187 r_nbd_other 0.182 r_symmetry_vdw_other 0.17 r_symmetry_vdw_refined 0.164 r_xyhbond_nbd_refined 0.121 r_symmetry_hbond_refined 0.112 r_nbtor_other 0.087 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1325 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing