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Crystal Structure of P450BioI in complex with tetradecanoic acid ligated Acyl Carrier Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other SAD Structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 0.1 M Na HEPES, 0.25 M NaCl, 0.15 M Li2SO4, 19% PEG 4000, 0.2% n-heptyl b-D-thioglucopyranoside, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.54 51.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.3 α = 109 b = 92.1 β = 89.2 c = 107.7 γ = 90.1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.98089 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 96.9 0.0604 21.8 7.9 149113 144447 25.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 94.9 0.33 7.4 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT SAD Structure 2 20 149113 139586 7336 97.7 0.224 0.222 0.2231 0.266 0.2682 RANDOM 28.83
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 -0.06 0.16 0.83 1.97 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.52 r_dihedral_angle_4_deg 13.341 r_dihedral_angle_3_deg 12.715 r_dihedral_angle_1_deg 4.92 r_scangle_it 0.983 r_mcangle_it 0.615 r_scbond_it 0.613 r_angle_refined_deg 0.499 r_mcbond_it 0.351 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.52 r_dihedral_angle_4_deg 13.341 r_dihedral_angle_3_deg 12.715 r_dihedral_angle_1_deg 4.92 r_scangle_it 0.983 r_mcangle_it 0.615 r_scbond_it 0.613 r_angle_refined_deg 0.499 r_mcbond_it 0.351 r_nbtor_refined 0.314 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.179 r_symmetry_hbond_refined 0.175 r_symmetry_vdw_refined 0.15 r_chiral_restr 0.036 r_bond_refined_d 0.003 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14661 Nucleic Acid Atoms Solvent Atoms 1338 Heterogen Atoms 401
Software Software Software Name Purpose XDS data scaling Coot model building REFMAC refinement XDS data reduction XSCALE data scaling