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Structure of Pellino2 FHA domain at 3.3 Angstroms resolution.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EGA PDB ENTRY 3EGA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 295 0.05 M sodium citrate, 23% w/v PEG 3350 MME, 1 M NaCl, pH 5.5, vapor diffusion, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.95 37.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.676 α = 90 b = 89.484 β = 90 c = 125.557 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 41 99.9 0.16 19 8.4 8337
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.38 99 0.46 4.5 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3EGA 3.25 41 7849 7839 380 99.83 0.242 0.238 0.2344 0.315 0.2867 RANDOM 43.291
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.89 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.57 r_dihedral_angle_3_deg 20.252 r_dihedral_angle_4_deg 17.366 r_dihedral_angle_1_deg 6.89 r_mcangle_it 4.883 r_mcbond_it 4.271 r_scangle_it 1.446 r_angle_refined_deg 1.329 r_scbond_it 0.826 r_nbtor_refined 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.57 r_dihedral_angle_3_deg 20.252 r_dihedral_angle_4_deg 17.366 r_dihedral_angle_1_deg 6.89 r_mcangle_it 4.883 r_mcbond_it 4.271 r_scangle_it 1.446 r_angle_refined_deg 1.329 r_scbond_it 0.826 r_nbtor_refined 0.315 r_nbd_refined 0.238 r_symmetry_vdw_refined 0.225 r_symmetry_hbond_refined 0.204 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3244 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling