☰ Navigation Tabs
Structure of the Cyclomodulin Cif from Pathogenic Escherichia coli
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.8 277.15 1.85M Sodium Malonate, 0.1M tri-sodium citrate dihydrate, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 3.74 67.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.768 α = 90 b = 111.768 β = 90 c = 107.518 γ = 90
Symmetry Space Group P 42 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 315 2005-04-10 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.000 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 74589
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 45.33 70675 3755 98.95 0.18262 0.18056 0.1863 0.22202 0.2245 RANDOM 21.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.36 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.081 r_dihedral_angle_4_deg 17.775 r_dihedral_angle_3_deg 13.096 r_dihedral_angle_1_deg 6.084 r_scangle_it 5.279 r_scbond_it 3.3 r_mcangle_it 2.239 r_angle_refined_deg 1.639 r_mcbond_it 1.174 r_angle_other_deg 0.952
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.081 r_dihedral_angle_4_deg 17.775 r_dihedral_angle_3_deg 13.096 r_dihedral_angle_1_deg 6.084 r_scangle_it 5.279 r_scbond_it 3.3 r_mcangle_it 2.239 r_angle_refined_deg 1.639 r_mcbond_it 1.174 r_angle_other_deg 0.952 r_mcbond_other 0.312 r_symmetry_hbond_refined 0.304 r_symmetry_vdw_other 0.298 r_symmetry_vdw_refined 0.259 r_xyhbond_nbd_refined 0.245 r_chiral_restr 0.1 r_xyhbond_nbd_other 0.02 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2916 Nucleic Acid Atoms Solvent Atoms 751 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling