☰ Navigation Tabs
T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-714
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 10% MPD, 0.1 AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.61 52.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.961 α = 90 b = 119.157 β = 111.38 c = 63.04 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 123.2 CCD ADSC QUANTUM 315 2008-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 95.5 0.099 17.8 8 58529
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 75.8 0.443 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 28.75 55462 3331 95.07 0.242 0.24 0.2094 0.282 0.2472 RANDOM 43.028
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.436 r_dihedral_angle_4_deg 17.916 r_dihedral_angle_3_deg 16.57 r_dihedral_angle_1_deg 4.683 r_scangle_it 2.682 r_scbond_it 1.803 r_angle_refined_deg 1.297 r_mcangle_it 1.212 r_mcbond_it 0.749 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.436 r_dihedral_angle_4_deg 17.916 r_dihedral_angle_3_deg 16.57 r_dihedral_angle_1_deg 4.683 r_scangle_it 2.682 r_scbond_it 1.803 r_angle_refined_deg 1.297 r_mcangle_it 1.212 r_mcbond_it 0.749 r_nbtor_refined 0.303 r_nbd_refined 0.217 r_xyhbond_nbd_refined 0.184 r_symmetry_vdw_refined 0.156 r_symmetry_hbond_refined 0.112 r_chiral_restr 0.088 r_metal_ion_refined 0.071 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5736 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 56
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling