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Candida glabrata Dihydrofolate Reductase complexed with 2,4-diamino-5-[3-methyl-3-(3-methoxy-5-(3,5-dimethylphenyl)phenyl)prop-1-ynyl]-6-methylpyrimidine(UCP11153TM) and NADPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 PEG4000, MgCl2, pH 8.5, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2 38.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.83 α = 90 b = 42.83 β = 90 c = 230.984 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol CgB5 1 100 1 1 x-ray CCD 2008-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 42.8 0.087 17.6 4 28869
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 0.284 2 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.95 42.84 28869 1456 96 0.174 0.171 0.243 0.204 RANDOM 19.807
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.358 r_dihedral_angle_1_deg 22.405 r_dihedral_angle_3_deg 20.649 r_dihedral_angle_4_deg 18.889 r_scangle_it 4.543 r_scbond_it 3.446 r_angle_refined_deg 2.839 r_mcangle_it 2.156 r_mcbond_it 1.479 r_symmetry_vdw_refined 0.429
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.358 r_dihedral_angle_1_deg 22.405 r_dihedral_angle_3_deg 20.649 r_dihedral_angle_4_deg 18.889 r_scangle_it 4.543 r_scbond_it 3.446 r_angle_refined_deg 2.839 r_mcangle_it 2.156 r_mcbond_it 1.479 r_symmetry_vdw_refined 0.429 r_nbd_refined 0.329 r_nbtor_refined 0.32 r_chiral_restr 0.243 r_xyhbond_nbd_refined 0.169 r_symmetry_hbond_refined 0.035 r_bond_refined_d 0.032 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3688 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 154
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction