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Candida glabrata Dihydrofolate Reductase complexed with 2,4-diamino-5-[3-methyl-3-(3-methoxy-5-phenylphenyl)prop-1-ynyl]-6-methylpyrimidine(UCP111D) and NADPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 PEG4000, MgCl2, pH 8.5, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.01 38.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.871 α = 90 b = 42.871 β = 90 c = 231.485 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2008-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 98.8 0.055 36.043 4.4 23986
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 92.2 0.108 4.3 2248
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.11 37.48 23906 1221 99.5 0.17 0.167 0.229 0.221 RANDOM 16.907
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.066 r_dihedral_angle_1_deg 31.619 r_dihedral_angle_3_deg 18.257 r_dihedral_angle_4_deg 17.13 r_scangle_it 4.615 r_scbond_it 3.276 r_angle_refined_deg 2.268 r_mcangle_it 1.907 r_mcbond_it 1.367 r_symmetry_vdw_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.066 r_dihedral_angle_1_deg 31.619 r_dihedral_angle_3_deg 18.257 r_dihedral_angle_4_deg 17.13 r_scangle_it 4.615 r_scbond_it 3.276 r_angle_refined_deg 2.268 r_mcangle_it 1.907 r_mcbond_it 1.367 r_symmetry_vdw_refined 0.328 r_nbtor_refined 0.311 r_nbd_refined 0.216 r_symmetry_hbond_refined 0.205 r_chiral_restr 0.185 r_xyhbond_nbd_refined 0.178 r_bond_refined_d 0.022 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3692 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 150
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection