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Crystal Structure Analysis of Tripeptidyl peptidase -I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.9 293 7% PEG 4000, 0.02M zinc sulfate, 0.1M sodium acetate, 0.1M ammonium sulfate, pH 4.9, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.95 58.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.45 α = 90 b = 128.93 β = 90 c = 100.5 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 39.21 98.8 0.0343 0.0591 17.2 7.18 62056 61321 2 3 42.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.45 97.2 0.3121 0.4155 3.15 6.11 7206
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 39.21 61829 61321 3150 99.5 0.221 0.221 0.218 0.2251 0.262 0.2669 RANDOM 68.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 5.46 -5.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.202 r_dihedral_angle_3_deg 19.457 r_dihedral_angle_4_deg 17.632 r_dihedral_angle_1_deg 10.49 r_scangle_it 1.844 r_angle_refined_deg 1.436 r_angle_other_deg 1.415 r_scbond_it 1.187 r_mcangle_it 0.847 r_mcbond_it 0.454
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.202 r_dihedral_angle_3_deg 19.457 r_dihedral_angle_4_deg 17.632 r_dihedral_angle_1_deg 10.49 r_scangle_it 1.844 r_angle_refined_deg 1.436 r_angle_other_deg 1.415 r_scbond_it 1.187 r_mcangle_it 0.847 r_mcbond_it 0.454 r_mcbond_other 0.076 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8162 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 126
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection HKL-2000 data reduction SADABS data scaling SHELXD phasing