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R2-like ligand binding Mn/Fe oxidase from M. tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 180mM Calcium acetate, 15-18% PEG18000, 0.1M Sodium Cacodylate, pH6.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.06 40.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.565 α = 90 b = 54.565 β = 90 c = 176.651 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 47 99.9 0.069 17.1 5.2 24918 24918 19.98
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.4 0.362 3.5 4.4 3548
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 36.85 23650 23650 1268 99.85 0.14999 0.14999 0.14852 0.1627 0.17692 0.1883 RANDOM 13.576
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.21 0.42 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.857 r_dihedral_angle_4_deg 18.855 r_dihedral_angle_3_deg 13.291 r_scangle_it 5.263 r_dihedral_angle_1_deg 5.194 r_scbond_it 3.311 r_mcangle_it 1.872 r_angle_refined_deg 1.699 r_angle_other_deg 1.41 r_mcbond_it 1.024
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.857 r_dihedral_angle_4_deg 18.855 r_dihedral_angle_3_deg 13.291 r_scangle_it 5.263 r_dihedral_angle_1_deg 5.194 r_scbond_it 3.311 r_mcangle_it 1.872 r_angle_refined_deg 1.699 r_angle_other_deg 1.41 r_mcbond_it 1.024 r_mcbond_other 0.324 r_chiral_restr 0.105 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2319 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 18
Software Software Software Name Purpose ADSC data collection SHARP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling