☰ Navigation Tabs
Replacement of Val3 in Human Thymidylate Synthase Affects Its Kinetic Properties and Intracellular Stability
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 1.0M Tris, PH8.5, 35-40%ammonium sulfate, 20mM BME, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.022 α = 90 b = 96.022 β = 90 c = 80.723 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD 2006-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 86 0.084 36.655 4.9 37591
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 45.4 0.66 2 1964
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.75 50 37576 1885 85.91 0.231 0.229 0.3048 0.268 RANDOM 51.417
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.58 -1.79 -3.58 5.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.423 r_dihedral_angle_4_deg 21.672 r_dihedral_angle_3_deg 19.378 r_dihedral_angle_1_deg 6.513 r_scangle_it 5.723 r_scbond_it 3.835 r_mcangle_it 2.575 r_angle_refined_deg 2.396 r_mcbond_it 1.687 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.423 r_dihedral_angle_4_deg 21.672 r_dihedral_angle_3_deg 19.378 r_dihedral_angle_1_deg 6.513 r_scangle_it 5.723 r_scbond_it 3.835 r_mcangle_it 2.575 r_angle_refined_deg 2.396 r_mcbond_it 1.687 r_nbtor_refined 0.32 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_refined 0.195 r_chiral_restr 0.163 r_symmetry_hbond_refined 0.108 r_bond_refined_d 0.03 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2116 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction CNS phasing