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Structural base for cyclodextrin hydrolysis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.75 293 0.1M Tris, 17% PEG1500, pH8.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 46.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.137 α = 90 b = 110.792 β = 90 c = 106.398 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 20 99.8 0.099 5.5 122229 21.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.82 100 0.31 4.8 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.77 19.71 119779 2445 100 0.176 0.175 0.1719 0.208 0.2049 RANDOM 21.191
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.09 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.155 r_dihedral_angle_4_deg 15.372 r_dihedral_angle_3_deg 14.03 r_dihedral_angle_1_deg 6.049 r_scangle_it 2.957 r_scbond_it 1.931 r_angle_refined_deg 1.385 r_mcangle_it 1.208 r_mcbond_it 0.782 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.155 r_dihedral_angle_4_deg 15.372 r_dihedral_angle_3_deg 14.03 r_dihedral_angle_1_deg 6.049 r_scangle_it 2.957 r_scbond_it 1.931 r_angle_refined_deg 1.385 r_mcangle_it 1.208 r_mcbond_it 0.782 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.232 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.146 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.093 r_metal_ion_refined 0.061 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9540 Nucleic Acid Atoms Solvent Atoms 1105 Heterogen Atoms 204
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction XSCALE data scaling REFMAC phasing