☰ Navigation Tabs
Carbonmonoxy Sperm Whale Myoglobin at 40 K: Laser on
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MBC PDB ENTRY 1MBC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 batch 6 293 2.4M Ammonium sulfate, 10mM TrisHCl, 100mM Sodium phosphate, pH 6.0, batch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.87 34.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.31 α = 90 b = 30.63 β = 105.76 c = 63.729 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 40 CCD MAR CCD 165 mm 2007-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW14A 0.827 Photon Factory AR-NW14A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 50 95.5 0.033 15.1 3.7 37319 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.21 1.25 81.1 0.204 3.1 3122
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MBC 1.21 19.93 37300 1875 95.68 0.145 0.143 0.1418 0.179 0.1777 RANDOM 13.262
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.03 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.934 r_dihedral_angle_4_deg 19.148 r_dihedral_angle_3_deg 13.743 r_sphericity_free 10.088 r_scangle_it 5.469 r_sphericity_bonded 5.454 r_dihedral_angle_1_deg 4.952 r_scbond_it 4.003 r_mcangle_it 2.891 r_rigid_bond_restr 2.473
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.934 r_dihedral_angle_4_deg 19.148 r_dihedral_angle_3_deg 13.743 r_sphericity_free 10.088 r_scangle_it 5.469 r_sphericity_bonded 5.454 r_dihedral_angle_1_deg 4.952 r_scbond_it 4.003 r_mcangle_it 2.891 r_rigid_bond_restr 2.473 r_mcbond_it 2.043 r_angle_refined_deg 1.933 r_nbtor_refined 0.319 r_nbd_refined 0.264 r_symmetry_vdw_refined 0.141 r_chiral_restr 0.135 r_symmetry_hbond_refined 0.135 r_xyhbond_nbd_refined 0.11 r_bond_refined_d 0.02 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1217 Nucleic Acid Atoms Solvent Atoms 172 Heterogen Atoms 55
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling