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Microtubule-associated protein 1 light chain 3 alpha isoform A (MAP1ALC3)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UGM PDB entry 1UGM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 32 % PEG 4000, 0.1 M NA ACETATE, PH 4.50, 0.2 M AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, CRYOPROTECTION 20% GLYCEROL, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 2.07 40.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.066 α = 90 b = 80.066 β = 90 c = 37.089 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD MIRRORS 2007-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97926 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 40 99.4 0.059 4.1 7058 7058 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.65 2.74 100 0.713 2.19 4.1 682
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1UGM 2.65 28.31 6602 397 99.42 0.2371 0.23325 0.2361 0.30379 0.3148 RANDOM 37.478
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.11 -1.11 2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.736 r_dihedral_angle_3_deg 17.557 r_dihedral_angle_4_deg 15.968 r_dihedral_angle_1_deg 6.746 r_mcangle_it 1.968 r_scangle_it 1.869 r_angle_refined_deg 1.348 r_scbond_it 1.206 r_mcbond_it 1.181 r_angle_other_deg 0.929
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.736 r_dihedral_angle_3_deg 17.557 r_dihedral_angle_4_deg 15.968 r_dihedral_angle_1_deg 6.746 r_mcangle_it 1.968 r_scangle_it 1.869 r_angle_refined_deg 1.348 r_scbond_it 1.206 r_mcbond_it 1.181 r_angle_other_deg 0.929 r_mcbond_other 0.219 r_chiral_restr 0.072 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1649 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling