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Crystal structure of an ntf2-like protein (ava_4193) from anabaena variabilis atcc 29413 at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 2.4000M (NH4)2SO4, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.14 42.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.056 α = 90 b = 74.056 β = 90 c = 189.378 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-08-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97864 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.323 100 0.154 0.154 4.213 7.2 42557 15.218
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 100 0.668 0.668 1.1 7.3 3089
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.323 42468 2144 99.95 0.184 0.182 0.1892 0.222 0.2287 RANDOM 21.847
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.233 r_dihedral_angle_4_deg 14.999 r_dihedral_angle_3_deg 10.675 r_scangle_it 5.028 r_dihedral_angle_1_deg 4.695 r_scbond_it 3.872 r_mcangle_it 2.011 r_angle_refined_deg 1.683 r_mcbond_it 1.437 r_angle_other_deg 1.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.233 r_dihedral_angle_4_deg 14.999 r_dihedral_angle_3_deg 10.675 r_scangle_it 5.028 r_dihedral_angle_1_deg 4.695 r_scbond_it 3.872 r_mcangle_it 2.011 r_angle_refined_deg 1.683 r_mcbond_it 1.437 r_angle_other_deg 1.323 r_mcbond_other 0.261 r_symmetry_vdw_other 0.208 r_nbd_refined 0.174 r_nbtor_refined 0.171 r_nbd_other 0.148 r_symmetry_vdw_refined 0.131 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.1 r_symmetry_hbond_refined 0.098 r_nbtor_other 0.073 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4125 Nucleic Acid Atoms Solvent Atoms 383 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing