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CRYSTAL STRUCTURE OF A NTF2-like protein (BTH_I0051) FROM BURKHOLDERIA THAILANDENSIS E264 AT 1.60 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 0.2000M Ca(OAc)2, 20.0000% PEG-8000, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.33 47.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.849 α = 90 b = 52.021 β = 90 c = 111.494 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-08-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162,0.97932,0.97920 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 27.875 99.9 0.092 0.092 5.825 3.6 40560 14.705
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 99.7 0.498 0.498 1.5 3.6 2958
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 27.875 40506 2031 99.77 0.169 0.168 0.1734 0.198 0.203 RANDOM 16.976
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 0.44 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.504 r_dihedral_angle_3_deg 12.293 r_dihedral_angle_4_deg 10.328 r_dihedral_angle_1_deg 6.271 r_scangle_it 5.995 r_scbond_it 4.172 r_mcangle_it 2.543 r_mcbond_it 1.907 r_angle_refined_deg 1.457 r_angle_other_deg 0.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.504 r_dihedral_angle_3_deg 12.293 r_dihedral_angle_4_deg 10.328 r_dihedral_angle_1_deg 6.271 r_scangle_it 5.995 r_scbond_it 4.172 r_mcangle_it 2.543 r_mcbond_it 1.907 r_angle_refined_deg 1.457 r_angle_other_deg 0.934 r_mcbond_other 0.518 r_symmetry_vdw_other 0.359 r_nbd_refined 0.208 r_nbd_other 0.201 r_nbtor_refined 0.183 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.172 r_chiral_restr 0.091 r_nbtor_other 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2055 Nucleic Acid Atoms Solvent Atoms 359 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing