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Crystal structure of Putative Acetyltransferase from the GNAT family (YP_497011.1) from NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.43 277 33.8% polyethylene glycol 4000, 0.2M sodium acetate, 0.1M TRIS pH 8.43, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.08 40.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.523 α = 90 b = 63.984 β = 90 c = 143.149 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-07-31 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97837 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.21 99.9 0.104 0.104 5.628 3.6 38799 17.581
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 100 0.505 0.505 1.5 3.7 2849
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.21 38743 1941 99.78 0.173 0.171 0.1751 0.215 0.2169 RANDOM 29.719
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -1.22 1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.661 r_dihedral_angle_4_deg 14.231 r_dihedral_angle_3_deg 12.072 r_dihedral_angle_1_deg 5.845 r_scangle_it 5.116 r_scbond_it 3.988 r_mcangle_it 2.613 r_mcbond_it 1.868 r_angle_refined_deg 1.563 r_angle_other_deg 1.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.661 r_dihedral_angle_4_deg 14.231 r_dihedral_angle_3_deg 12.072 r_dihedral_angle_1_deg 5.845 r_scangle_it 5.116 r_scbond_it 3.988 r_mcangle_it 2.613 r_mcbond_it 1.868 r_angle_refined_deg 1.563 r_angle_other_deg 1.004 r_mcbond_other 0.712 r_nbd_other 0.222 r_symmetry_vdw_other 0.22 r_nbd_refined 0.217 r_nbtor_refined 0.178 r_symmetry_hbond_refined 0.162 r_xyhbond_nbd_refined 0.15 r_symmetry_vdw_refined 0.109 r_chiral_restr 0.096 r_nbtor_other 0.088 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3324 Nucleic Acid Atoms Solvent Atoms 493 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction SHELXD phasing autoSHARP phasing