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Crystal structure of the bb fragment of ERp72
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 18% PEG MME 2000, 25% glycerol, 0.1M Tris, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.66 53.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.171 α = 90 b = 62.171 β = 90 c = 135.004 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 2006-07-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.9799, 0.9796, 0.9646 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 50 99.4 0.033 20.6 2.8 42416 42162 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.99 95.2 0.358 3.5 2.3 3075
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.92 19.48 42233 42162 2238 99.83 0.19011 0.18757 0.23613 0.2249 RANDOM 27.919
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.411 r_dihedral_angle_4_deg 20.628 r_dihedral_angle_3_deg 16.667 r_dihedral_angle_1_deg 5.557 r_scangle_it 3.968 r_scbond_it 2.61 r_mcangle_it 1.664 r_angle_refined_deg 1.556 r_mcbond_it 1.141 r_nbtor_refined 0.313
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.411 r_dihedral_angle_4_deg 20.628 r_dihedral_angle_3_deg 16.667 r_dihedral_angle_1_deg 5.557 r_scangle_it 3.968 r_scbond_it 2.61 r_mcangle_it 1.664 r_angle_refined_deg 1.556 r_mcbond_it 1.141 r_nbtor_refined 0.313 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.215 r_symmetry_vdw_refined 0.209 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.117 r_bond_refined_d 0.018 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3689 Nucleic Acid Atoms Solvent Atoms 388 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling