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Crystal structure of a ntf2-like protein of unknown function (bpss0132) from burkholderia pseudomallei k96243 at 1.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 20.0000% Glycerol, 0.0400M KH2PO4, 16.0000% PEG-8000, No Buffer pH None, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.74 55.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.73 α = 90 b = 75.73 β = 90 c = 50.07 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-08-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97848,0.97904 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 27.431 99 0.062 0.078 9.59 40949 -3 13.652
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.35 98.2 0.481 0.607 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.3 27.431 40924 2061 99.77 0.141 0.14 0.1488 0.162 0.1707 RANDOM 20.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.18 -0.36 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.561 r_dihedral_angle_4_deg 12.502 r_dihedral_angle_3_deg 10.642 r_sphericity_free 8.015 r_sphericity_bonded 5.733 r_dihedral_angle_1_deg 4.916 r_scangle_it 4.905 r_scbond_it 3.943 r_rigid_bond_restr 3.077 r_mcangle_it 2.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.561 r_dihedral_angle_4_deg 12.502 r_dihedral_angle_3_deg 10.642 r_sphericity_free 8.015 r_sphericity_bonded 5.733 r_dihedral_angle_1_deg 4.916 r_scangle_it 4.905 r_scbond_it 3.943 r_rigid_bond_restr 3.077 r_mcangle_it 2.95 r_mcbond_it 2.254 r_angle_refined_deg 1.76 r_mcbond_other 1.61 r_angle_other_deg 1.519 r_symmetry_vdw_other 0.267 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.186 r_nbd_other 0.18 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.124 r_chiral_restr 0.111 r_symmetry_hbond_refined 0.101 r_nbtor_other 0.078 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1032 Nucleic Acid Atoms Solvent Atoms 209 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction