X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3EANPDB ENTRY 3EAN

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52980.1M HEPES, PEG 3350 15%, 12% of ethylene glycol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.7755.52

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.231α = 90
b = 137.754β = 94
c = 168.954γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCDmirrors2007-11-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I911-30.908MAX III911-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.16499.80.1310.13110.93.3648046480476
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.1013.271000.5591.93

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3EAN3.1306113961139327699.340.258060.258060.25640.28873RANDOM56.314
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.11-0.250.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.852
r_dihedral_angle_4_deg21.978
r_dihedral_angle_3_deg18.532
r_dihedral_angle_1_deg7.837
r_scangle_it1.724
r_angle_refined_deg1.558
r_scbond_it1.017
r_mcangle_it0.839
r_mcbond_it0.492
r_symmetry_vdw_refined0.384
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.852
r_dihedral_angle_4_deg21.978
r_dihedral_angle_3_deg18.532
r_dihedral_angle_1_deg7.837
r_scangle_it1.724
r_angle_refined_deg1.558
r_scbond_it1.017
r_mcangle_it0.839
r_mcbond_it0.492
r_symmetry_vdw_refined0.384
r_nbtor_refined0.313
r_symmetry_hbond_refined0.252
r_nbd_refined0.228
r_xyhbond_nbd_refined0.142
r_chiral_restr0.098
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms22568
Nucleic Acid Atoms
Solvent Atoms36
Heterogen Atoms510

Software

Software
Software NamePurpose
ProDCdata collection
MOLREPphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling