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Crystal structure of ABC transporter, substrate binding protein Aeropyrum pernix
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 25% PEG 1500, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.08 40.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.125 α = 90 b = 91.07 β = 90 c = 192.86 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210 mirror 2008-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 0.9799 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 44.32 88.8 0.113 0.113 17.6 11 25048 22243 14.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 74.1 0.354 0.39 6.2 9.9 2627
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 44.32 25048 22242 1123 88.6 0.171 0.16691 0.16484 0.1667 0.20651 0.2092 RANDOM 13.884
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.552 r_dihedral_angle_4_deg 13.713 r_dihedral_angle_3_deg 12.415 r_dihedral_angle_1_deg 5.459 r_scangle_it 1.952 r_scbond_it 1.244 r_angle_refined_deg 1.049 r_mcangle_it 0.772 r_mcbond_it 0.524 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.552 r_dihedral_angle_4_deg 13.713 r_dihedral_angle_3_deg 12.415 r_dihedral_angle_1_deg 5.459 r_scangle_it 1.952 r_scbond_it 1.244 r_angle_refined_deg 1.049 r_mcangle_it 0.772 r_mcbond_it 0.524 r_nbtor_refined 0.305 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.172 r_xyhbond_nbd_refined 0.111 r_symmetry_hbond_refined 0.087 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2973 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 7
Software Software Software Name Purpose CBASS data collection SHELX model building SHARP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing