☰ Navigation Tabs
CRYSTAL STRUCTURE OF a GAF domain containing protein that belongs to Pfam DUF484 family (PA5279) FROM PSEUDOMONAS AERUGINOSA AT 2.43 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 0.2000M Ca(OAc)2, 10.0000% PEG-8000, 0.1M Imidazole pH 8.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.43 49.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.841 α = 90 b = 88.114 β = 107.92 c = 60.963 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-01-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837,0.97975 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 29.412 99.8 0.074 7.038 3.7 20453 59.268
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.49 99.8 0.689 0.689 1.1 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.43 29.412 20436 1044 99.7 0.214 0.211 0.2127 0.27 0.2654 RANDOM 53.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.85 -0.36 -1.13 1.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.503 r_dihedral_angle_4_deg 16.537 r_dihedral_angle_3_deg 13.424 r_scangle_it 6.489 r_scbond_it 4.548 r_dihedral_angle_1_deg 3.888 r_mcangle_it 2.794 r_mcbond_it 1.595 r_angle_refined_deg 1.202 r_angle_other_deg 0.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.503 r_dihedral_angle_4_deg 16.537 r_dihedral_angle_3_deg 13.424 r_scangle_it 6.489 r_scbond_it 4.548 r_dihedral_angle_1_deg 3.888 r_mcangle_it 2.794 r_mcbond_it 1.595 r_angle_refined_deg 1.202 r_angle_other_deg 0.852 r_symmetry_vdw_other 0.338 r_mcbond_other 0.266 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.182 r_nbd_other 0.177 r_nbtor_refined 0.166 r_symmetry_vdw_refined 0.126 r_nbtor_other 0.086 r_symmetry_hbond_refined 0.069 r_chiral_restr 0.065 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2687 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction autoSHARP phasing SHELXD phasing