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Crystal structure of transcriptional regulator of Crp/Fnr family (YP_604437.1) from DEINOCOCCUS GEOTHERMALIS DSM 11300 at 1.86 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.8 277 0.2000M KAcetate, 20.0000% PEG-3350, No Buffer pH 7.8, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.49 50.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68 α = 90 b = 68 β = 90 c = 111.45 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-08-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97929 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 29.399 99.8 0.067 17.84 11.45 22704 -3 26.147
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.86 1.93 99.6 0.631 2.43
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.86 29.399 22645 1158 99.87 0.21 0.208 0.2105 0.246 0.2423 RANDOM 30.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 -0.77 1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.754 r_dihedral_angle_4_deg 11.77 r_dihedral_angle_3_deg 10.499 r_scangle_it 6.283 r_scbond_it 4.467 r_dihedral_angle_1_deg 3.067 r_mcangle_it 2.96 r_mcbond_it 2.034 r_angle_refined_deg 1.458 r_angle_other_deg 0.953
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.754 r_dihedral_angle_4_deg 11.77 r_dihedral_angle_3_deg 10.499 r_scangle_it 6.283 r_scbond_it 4.467 r_dihedral_angle_1_deg 3.067 r_mcangle_it 2.96 r_mcbond_it 2.034 r_angle_refined_deg 1.458 r_angle_other_deg 0.953 r_mcbond_other 0.458 r_symmetry_vdw_other 0.292 r_nbd_refined 0.214 r_nbd_other 0.201 r_symmetry_vdw_refined 0.176 r_nbtor_refined 0.167 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.119 r_chiral_restr 0.086 r_nbtor_other 0.083 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1762 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction