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Putative NAD-dependent epimerase/dehydratase from Bacillus halodurans.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 294 40% PEG-300, 0.1 M phosphate-citrate buffer, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.92 68.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.687 α = 90 b = 113.687 β = 90 c = 63.645 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 95.7 0.089 51.6 15 24007 24007 50.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 73.7 0.848 2.42 11.3 914
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 50 23940 23940 1225 95.39 0.173 0.173 0.172 0.1721 0.193 0.1914 RANDOM 49.399
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.87 -1.87 3.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.226 r_dihedral_angle_4_deg 17.189 r_dihedral_angle_3_deg 14.907 r_dihedral_angle_1_deg 6.278 r_scangle_it 2.643 r_scbond_it 2.027 r_angle_refined_deg 1.705 r_angle_other_deg 1.058 r_mcangle_it 0.995 r_mcbond_it 0.767
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.226 r_dihedral_angle_4_deg 17.189 r_dihedral_angle_3_deg 14.907 r_dihedral_angle_1_deg 6.278 r_scangle_it 2.643 r_scbond_it 2.027 r_angle_refined_deg 1.705 r_angle_other_deg 1.058 r_mcangle_it 0.995 r_mcbond_it 0.767 r_symmetry_vdw_other 0.272 r_mcbond_other 0.22 r_symmetry_hbond_refined 0.217 r_nbd_refined 0.21 r_nbd_other 0.209 r_xyhbond_nbd_refined 0.191 r_nbtor_refined 0.17 r_symmetry_vdw_refined 0.127 r_chiral_restr 0.098 r_nbtor_other 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1643 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 49
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing