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Crystal structures of the kinase domain of AKT2 in complex with ATP-competitive inhibitors
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 298 14% PEG 2KMME, 100 mM Tris pH 8.0 and 10% ethanol diffused in. Seeded., vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.21 44.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.885 α = 90 b = 116.885 β = 90 c = 45.115 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 un-focused beam 2005-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 41.21 100 0.179 4.1 5.7 23801 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 0.67 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 41.21 22560 1219 99.89 0.23203 0.22976 0.2342 0.273 RANDOM 26.795
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.952 r_dihedral_angle_3_deg 13.591 r_dihedral_angle_4_deg 13.151 r_dihedral_angle_1_deg 5.181 r_angle_refined_deg 1.17 r_angle_other_deg 0.764 r_scangle_it 0.601 r_mcangle_it 0.555 r_mcbond_it 0.521 r_scbond_it 0.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.952 r_dihedral_angle_3_deg 13.591 r_dihedral_angle_4_deg 13.151 r_dihedral_angle_1_deg 5.181 r_angle_refined_deg 1.17 r_angle_other_deg 0.764 r_scangle_it 0.601 r_mcangle_it 0.555 r_mcbond_it 0.521 r_scbond_it 0.391 r_symmetry_vdw_other 0.204 r_nbd_refined 0.18 r_nbtor_refined 0.176 r_nbd_other 0.172 r_symmetry_vdw_refined 0.12 r_xyhbond_nbd_refined 0.113 r_nbtor_other 0.079 r_mcbond_other 0.073 r_chiral_restr 0.052 r_symmetry_hbond_refined 0.043 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5426 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 68
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction JDirector data collection HKL-2000 data reduction PHASER phasing