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Crystal structure of putative beta-phosphoglucomutase from Streptococcus thermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.2M Lithium sulfate, 0.1M Tris-Cl pH 7.0, 2.0M Ammounium sulfate , VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.78 55.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.784 α = 90 b = 88.784 β = 90 c = 118.846 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2008-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97959 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 50 100 0.08 26.74 10.1 46085 46069 -3 18.608
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.86 1.88 100 0.404 3.76 7.9 1129
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.86 50 46028 43701 2327 99.91 0.1713 0.1713 0.1698 0.1685 0.19907 0.1992 RANDOM 17.338
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.16 0.32 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.556 r_dihedral_angle_3_deg 12.166 r_dihedral_angle_4_deg 9.92 r_dihedral_angle_1_deg 5.347 r_scangle_it 3.239 r_scbond_it 2.04 r_angle_refined_deg 1.191 r_mcangle_it 1.065 r_mcbond_it 0.7 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.556 r_dihedral_angle_3_deg 12.166 r_dihedral_angle_4_deg 9.92 r_dihedral_angle_1_deg 5.347 r_scangle_it 3.239 r_scbond_it 2.04 r_angle_refined_deg 1.191 r_mcangle_it 1.065 r_mcbond_it 0.7 r_nbtor_refined 0.306 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.179 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.088 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3317 Nucleic Acid Atoms Solvent Atoms 364 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing