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Crystal structure of human insulin degrading enzyme in complex with transforming growth factor-alpha
Crystallization Crystal Properties Matthews coefficient Solvent content 3.73 67.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 262.172 α = 90 b = 262.172 β = 90 c = 90.522 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate 2007-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 1.0003 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 100 0.094 0.087 23.6 7.1 159824 157230 1 1 11.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 50 149322 7893 99.79 0.19274 0.1907 0.1959 0.23133 0.2336 RANDOM 32.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.03 -0.05 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.055 r_dihedral_angle_4_deg 20.178 r_dihedral_angle_3_deg 19.014 r_dihedral_angle_1_deg 6.887 r_scangle_it 5.038 r_scbond_it 3.429 r_mcangle_it 1.989 r_angle_refined_deg 1.982 r_mcbond_it 1.23 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.055 r_dihedral_angle_4_deg 20.178 r_dihedral_angle_3_deg 19.014 r_dihedral_angle_1_deg 6.887 r_scangle_it 5.038 r_scbond_it 3.429 r_mcangle_it 1.989 r_angle_refined_deg 1.982 r_mcbond_it 1.23 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.222 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.15 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15727 Nucleic Acid Atoms Solvent Atoms 568 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement