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Crystal structure of NADH:FMN oxidoreductase like protein in complex with FMN (YP_544701.1) from METHYLOBACILLUS FLAGELLATUS KT at 1.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 0.2M calcium acetate, 30.0% polyethylene glycol 400, 0.1M sodium acetate pH 4.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 1.92 35.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.01 α = 90 b = 64.84 β = 90 c = 100.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 1m long Rh coated bent cylindrical mirror forhorizontal and vertical focussing 2008-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 SSRL BL1-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 29.683 97.9 0.037 17.74 64048 -3 13.374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 87.2 0.453 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 29.683 63977 3233 98.79 0.121 0.119 0.151 0.1635 RANDOM 11.998
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.02 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.818 r_dihedral_angle_4_deg 15.55 r_dihedral_angle_3_deg 10.286 r_sphericity_free 8.402 r_dihedral_angle_1_deg 6.403 r_scangle_it 5.593 r_scbond_it 4.341 r_sphericity_bonded 3.726 r_mcangle_it 3.194 r_mcbond_it 2.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.818 r_dihedral_angle_4_deg 15.55 r_dihedral_angle_3_deg 10.286 r_sphericity_free 8.402 r_dihedral_angle_1_deg 6.403 r_scangle_it 5.593 r_scbond_it 4.341 r_sphericity_bonded 3.726 r_mcangle_it 3.194 r_mcbond_it 2.34 r_rigid_bond_restr 2.147 r_angle_refined_deg 1.531 r_angle_other_deg 1.462 r_mcbond_other 1.462 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2791 Nucleic Acid Atoms Solvent Atoms 373 Heterogen Atoms 99
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing