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Human cytochrome P450 2E1 in complex with the inhibitor 4-methylpyrazole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3E6I CYP2E1 IN COMPLEX WITH INDAZOLE (PDB ENTRY 3E6I)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 12% iso-propanol, 14% PEG 2000 MME, 0.1 M NaHEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.61 52.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.193 α = 90 b = 71.193 β = 90 c = 225.888 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2008-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 113.2 100 0.061 16.3 3.8 32629
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.67 100 0.373 3.1 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT CYP2E1 IN COMPLEX WITH INDAZOLE (PDB ENTRY 3E6I) 2.6 38.15 32629 1767 100 0.201 0.197 0.204 0.277 RANDOM 50.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.878 r_dihedral_angle_4_deg 23.696 r_dihedral_angle_3_deg 21.916 r_dihedral_angle_1_deg 9.719 r_scangle_it 3.822 r_scbond_it 2.392 r_angle_refined_deg 2.021 r_mcangle_it 1.485 r_mcbond_it 0.843 r_symmetry_hbond_refined 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.878 r_dihedral_angle_4_deg 23.696 r_dihedral_angle_3_deg 21.916 r_dihedral_angle_1_deg 9.719 r_scangle_it 3.822 r_scbond_it 2.392 r_angle_refined_deg 2.021 r_mcangle_it 1.485 r_mcbond_it 0.843 r_symmetry_hbond_refined 0.45 r_nbtor_refined 0.324 r_nbd_refined 0.255 r_symmetry_vdw_refined 0.226 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.128 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7543 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 98
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing