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Actinobacteria-specific protein of unknown function, SCO1997
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 290 0.1M MES pH 6.5, 0.55M Magnesium formate, 1.5% Glycerol, 0.25% N-octyl-beta-D-glucoside, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.85 56.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.083 α = 90 b = 135.083 β = 90 c = 135.083 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Pt-coated toroidal Si mirror for horizontal and vertical focusing followed by double flat Si crystal monochromator 2007-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 1.10000 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 100 100 0.084 37.98 22.1 27763 27763 35.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.895 4.6 22.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 95.35 25482 19088 1010 95.77 0.17747 0.17458 0.177 0.23401 RANDOM 34.305
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.767 r_dihedral_angle_4_deg 20.134 r_dihedral_angle_3_deg 16.586 r_dihedral_angle_1_deg 14.985 r_scangle_it 5.895 r_scbond_it 3.987 r_angle_refined_deg 2.422 r_mcangle_it 2.119 r_mcbond_it 1.3 r_symmetry_vdw_refined 0.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.767 r_dihedral_angle_4_deg 20.134 r_dihedral_angle_3_deg 16.586 r_dihedral_angle_1_deg 14.985 r_scangle_it 5.895 r_scbond_it 3.987 r_angle_refined_deg 2.422 r_mcangle_it 2.119 r_mcbond_it 1.3 r_symmetry_vdw_refined 0.345 r_nbtor_refined 0.306 r_nbd_refined 0.212 r_chiral_restr 0.21 r_xyhbond_nbd_refined 0.14 r_symmetry_hbond_refined 0.116 r_bond_refined_d 0.03 r_metal_ion_refined 0.015 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2086 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement CBASS data collection HKL-2000 data reduction HKL-2000 data scaling CNS phasing