☰ Navigation Tabs
Crystal structure of mouse kynurenine aminotransferase III, PLP-bound form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZJG PDB entry 2ZJG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 21% PEG 400, 150 mM CaCl2, 10% Glycerol, 100 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.82 α = 90 b = 91.82 β = 90 c = 233.649 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2008-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0809 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 30 91.1 0.15 10.4 32023 29301
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.69 0.52 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2ZJG 2.59 29.21 27593 1476 91 0.19585 0.19327 0.1933 0.24643 0.2438 RANDOM 30.531
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.139 r_dihedral_angle_3_deg 21.047 r_dihedral_angle_4_deg 20.706 r_dihedral_angle_1_deg 10.202 r_scangle_it 5.141 r_scbond_it 3.44 r_angle_refined_deg 2.211 r_mcangle_it 2.155 r_mcbond_it 1.168 r_nbtor_refined 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.139 r_dihedral_angle_3_deg 21.047 r_dihedral_angle_4_deg 20.706 r_dihedral_angle_1_deg 10.202 r_scangle_it 5.141 r_scbond_it 3.44 r_angle_refined_deg 2.211 r_mcangle_it 2.155 r_mcbond_it 1.168 r_nbtor_refined 0.34 r_symmetry_vdw_refined 0.302 r_symmetry_hbond_refined 0.282 r_chiral_restr 0.278 r_nbd_refined 0.273 r_xyhbond_nbd_refined 0.183 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6536 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection DENZO data reduction SCALA data scaling MOLREP phasing