☰ Navigation Tabs
The 1.4 A crystal structure of the large and cold-active Vibrio sp. alkaline phosphatase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.75 277 0.2M Li2SO4, 0.1M Tris, 23% PEG 3350, 3% v/v ethylene glycol, pH 7.75, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.46 49.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.24 α = 90 b = 165.98 β = 90 c = 57.48 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 19.71 92.9 0.027 0.027 17.8 4.3 205938 2 8.04
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.4 1.48 68.8 0.074 0.074 10.9 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 19.7 195629 10309 92.6 0.15595 0.15595 0.15539 0.1542 0.16648 RANDOM 8.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.325 r_dihedral_angle_4_deg 12.37 r_dihedral_angle_3_deg 11.037 r_dihedral_angle_1_deg 6.104 r_scangle_it 2.833 r_scbond_it 1.733 r_angle_refined_deg 1.177 r_mcangle_it 0.92 r_mcbond_it 0.486 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.325 r_dihedral_angle_4_deg 12.37 r_dihedral_angle_3_deg 11.037 r_dihedral_angle_1_deg 6.104 r_scangle_it 2.833 r_scbond_it 1.733 r_angle_refined_deg 1.177 r_mcangle_it 0.92 r_mcbond_it 0.486 r_chiral_restr 0.078 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8069 Nucleic Acid Atoms Solvent Atoms 847 Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction SCALA data scaling SHELXD phasing SHARP phasing