☰ Navigation Tabs
H. influenzae beta-carbonic anhydrase, variant W39F
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2A8D PDB ENTRY 2A8D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.3 295 0.04 M ammonium dihydrogen phosphate, pH 4.3, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.14 42.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.173 α = 90 b = 129.627 β = 90 c = 144.081 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2003-11-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.301 29.37 98.7 0.059 22.24 4.6 20243
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.301 2.38 99.3 0.316 4.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2A8D 2.301 29.37 20243 20242 1990 100 0.195 0.195 0.191 0.1975 0.236 0.241 RANDOM 44.069
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.04 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.348 r_dihedral_angle_4_deg 17.837 r_dihedral_angle_3_deg 15.17 r_dihedral_angle_1_deg 6.317 r_scangle_it 1.863 r_scbond_it 1.369 r_angle_refined_deg 1.158 r_mcangle_it 1.067 r_mcbond_it 0.94 r_angle_other_deg 0.907
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.348 r_dihedral_angle_4_deg 17.837 r_dihedral_angle_3_deg 15.17 r_dihedral_angle_1_deg 6.317 r_scangle_it 1.863 r_scbond_it 1.369 r_angle_refined_deg 1.158 r_mcangle_it 1.067 r_mcbond_it 0.94 r_angle_other_deg 0.907 r_nbd_refined 0.211 r_symmetry_vdw_other 0.194 r_nbd_other 0.19 r_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.171 r_symmetry_vdw_refined 0.16 r_symmetry_hbond_refined 0.155 r_mcbond_other 0.106 r_nbtor_other 0.087 r_chiral_restr 0.069 r_xyhbond_nbd_other 0.051 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2920 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 22
Software Software Software Name Purpose EPMR phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALEPACK data scaling