☰ Navigation Tabs
Crystal structure of S.pombe eRF1/eRF3 complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DT9 PDB ENTRY 1DT9, 1R5B experimental model PDB 1R5B PDB ENTRY 1DT9, 1R5B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 288 50mM MOPS, pH7.0, 500mM KCl, 12% PEG4000, 20% Glycerol, EVAPORATION, temperature 288K
Crystal Properties Matthews coefficient Solvent content 4.86 74.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.848 α = 90 b = 129.848 β = 90 c = 332.638 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9790 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 30 99.9 0.078 8 69011
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.62 0.56
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1DT9, 1R5B 3.5 30 1.9 65207 3474 99.69 0.25915 0.25808 0.2767 0.27987 RANDOM 75.544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.962 r_dihedral_angle_4_deg 19.596 r_dihedral_angle_3_deg 18.853 r_dihedral_angle_1_deg 7.579 r_angle_refined_deg 1.11 r_scangle_it 1.077 r_scbond_it 0.572 r_mcangle_it 0.457 r_mcbond_it 0.236 r_chiral_restr 0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.962 r_dihedral_angle_4_deg 19.596 r_dihedral_angle_3_deg 18.853 r_dihedral_angle_1_deg 7.579 r_angle_refined_deg 1.11 r_scangle_it 1.077 r_scbond_it 0.572 r_mcangle_it 0.457 r_mcbond_it 0.236 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13096 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SCALA data scaling PHASER phasing