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CRYSTAL STRUCTURE OF NAD-BINDING PROTEIN FROM Listeria innocua
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 294 100MM BIS-TRIS, PH 6.5, 25% PEG3350, 200MM MAGNESIUM CHLORIDE HEXAHYDRATE, 10% GLYCEROL, VAPOR DIFFUS SITTING DROP, TEMPERATURE 294K, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.54 51.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.083 α = 90 b = 91.555 β = 90 c = 96.453 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2008-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.9 0.093 6.8 6.2 59448 -5 28.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 98.8 0.71 1.5 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 20 57400 1814 99.78 0.18832 0.1868 0.187 0.23656 RANDOM 36.157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.52 -2.46 -2.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.823 r_dihedral_angle_3_deg 15.286 r_dihedral_angle_4_deg 9.302 r_scangle_it 7.37 r_dihedral_angle_1_deg 5.954 r_scbond_it 5.102 r_mcangle_it 4.302 r_mcbond_it 3.303 r_angle_refined_deg 1.308 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.823 r_dihedral_angle_3_deg 15.286 r_dihedral_angle_4_deg 9.302 r_scangle_it 7.37 r_dihedral_angle_1_deg 5.954 r_scbond_it 5.102 r_mcangle_it 4.302 r_mcbond_it 3.303 r_angle_refined_deg 1.308 r_nbtor_refined 0.298 r_symmetry_hbond_refined 0.219 r_xyhbond_nbd_refined 0.161 r_nbd_refined 0.16 r_symmetry_vdw_refined 0.133 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5335 Nucleic Acid Atoms Solvent Atoms 418 Heterogen Atoms 151
Software Software Software Name Purpose SHELX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing