☰ Navigation Tabs
6-phosphogluconolactonase from Plasmodium vivax
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 298 17% PEG 1000, 0.1 M potassium chloride, 0.1 M sodium acetate, 5 mM DTT, pH 5.0, vapor diffusion, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.03 39.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.524 α = 63.98 b = 80.846 β = 88.1 c = 89.765 γ = 80.01
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2007-07-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.9797 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 80.582 98 0.045 4 76585
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 40 76395 3839 97.78 0.152 0.15 0.202 0.2261 RANDOM 18.272
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.07 -0.15 0.04 -0.02 0.61 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.5 r_dihedral_angle_4_deg 14.804 r_dihedral_angle_3_deg 14.755 r_dihedral_angle_1_deg 6.89 r_scangle_it 4.866 r_scbond_it 3.153 r_mcangle_it 1.998 r_mcbond_it 1.124 r_angle_refined_deg 1.092 r_angle_other_deg 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.5 r_dihedral_angle_4_deg 14.804 r_dihedral_angle_3_deg 14.755 r_dihedral_angle_1_deg 6.89 r_scangle_it 4.866 r_scbond_it 3.153 r_mcangle_it 1.998 r_mcbond_it 1.124 r_angle_refined_deg 1.092 r_angle_other_deg 0.79 r_mcbond_other 0.341 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9740 Nucleic Acid Atoms Solvent Atoms 752 Heterogen Atoms 18
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing REFMAC refinement PDB_EXTRACT data extraction