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Crystal structure of a putative dehydrogenase from Xanthomonas campestris
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 100mM HEPES pH 7.5, 0.2M Calciumchloride,10% PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.2 44.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 251.286 α = 90 b = 41.351 β = 96.62 c = 73.323 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97929 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.69 44.77 99.9 0.106 7.4 7 83754 10 17.57
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.69 1.78 99.9 0.487 3.4 7 16267
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.69 19.63 82377 2504 98.24 0.162 0.161 0.1691 0.199 0.1636 RANDOM 16.993
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.62 r_dihedral_angle_4_deg 14.524 r_dihedral_angle_3_deg 11.357 r_dihedral_angle_1_deg 5.787 r_scangle_it 3.186 r_scbond_it 2.119 r_mcangle_it 1.691 r_angle_refined_deg 1.306 r_mcbond_it 1.152 r_angle_other_deg 0.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.62 r_dihedral_angle_4_deg 14.524 r_dihedral_angle_3_deg 11.357 r_dihedral_angle_1_deg 5.787 r_scangle_it 3.186 r_scbond_it 2.119 r_mcangle_it 1.691 r_angle_refined_deg 1.306 r_mcbond_it 1.152 r_angle_other_deg 0.937 r_mcbond_other 0.29 r_symmetry_vdw_other 0.26 r_symmetry_vdw_refined 0.237 r_nbd_refined 0.208 r_nbd_other 0.191 r_symmetry_hbond_refined 0.189 r_nbtor_refined 0.164 r_xyhbond_nbd_refined 0.152 r_metal_ion_refined 0.088 r_nbtor_other 0.084 r_chiral_restr 0.079 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5941 Nucleic Acid Atoms Solvent Atoms 806 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling SHELXS phasing