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Crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole kinase (NP_816404.1) from ENTEROCOCCUS FAECALIS V583 at 2.57 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 1.6M ammonium sulfate, 0.1M citric acid pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.15 70.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.705 α = 90 b = 181.705 β = 90 c = 181.705 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-06-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162,0.97954,0.97968 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 29.476 99.9 0.168 0.168 10 5.6 31815 50.24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.57 2.64 100 0.976 0.976 1.6 5.6 2335
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.57 29.476 31794 1604 99.85 0.177 0.175 0.204 0.179 RANDOM 32.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.146 r_dihedral_angle_4_deg 18.729 r_dihedral_angle_3_deg 16.553 r_scangle_it 7.324 r_dihedral_angle_1_deg 6.061 r_scbond_it 5.261 r_mcangle_it 2.582 r_mcbond_it 1.633 r_angle_refined_deg 1.487 r_angle_other_deg 0.931
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.146 r_dihedral_angle_4_deg 18.729 r_dihedral_angle_3_deg 16.553 r_scangle_it 7.324 r_dihedral_angle_1_deg 6.061 r_scbond_it 5.261 r_mcangle_it 2.582 r_mcbond_it 1.633 r_angle_refined_deg 1.487 r_angle_other_deg 0.931 r_mcbond_other 0.248 r_nbd_refined 0.223 r_symmetry_vdw_other 0.209 r_nbd_other 0.187 r_nbtor_refined 0.182 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.135 r_symmetry_hbond_refined 0.12 r_nbtor_other 0.088 r_chiral_restr 0.072 r_bond_refined_d 0.015 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4029 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction