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Crystal structure of PhzA/B from Burkholderia cepacia R18194 in complex with (R)-3-oxocyclohexanecarboxylic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 284 16-20% (w/v) PEG 3350, 0.2 M NH4OAc, 0.1 M Bis-Tris, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 284K
Crystal Properties Matthews coefficient Solvent content 2.26 45.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.74 α = 90 b = 64.74 β = 90 c = 161.03 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 99.9 0.051 24.1 8.5 40329 40290 4.9 34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.85 100 0.327 4.9 7.3 6075
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 19.39 38241 2017 99.94 0.15953 0.15779 0.198 0.1931 0.2297 RANDOM 30.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.08 r_dihedral_angle_4_deg 18.796 r_dihedral_angle_3_deg 15.194 r_dihedral_angle_1_deg 6.294 r_scangle_it 5.515 r_scbond_it 3.726 r_mcangle_it 2.333 r_angle_refined_deg 2.136 r_mcbond_it 1.761 r_angle_other_deg 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.08 r_dihedral_angle_4_deg 18.796 r_dihedral_angle_3_deg 15.194 r_dihedral_angle_1_deg 6.294 r_scangle_it 5.515 r_scbond_it 3.726 r_mcangle_it 2.333 r_angle_refined_deg 2.136 r_mcbond_it 1.761 r_angle_other_deg 1.03 r_mcbond_other 0.549 r_symmetry_hbond_refined 0.447 r_symmetry_vdw_other 0.38 r_xyhbond_nbd_refined 0.248 r_nbd_other 0.224 r_nbd_refined 0.222 r_nbtor_refined 0.192 r_symmetry_vdw_refined 0.188 r_chiral_restr 0.143 r_nbtor_other 0.096 r_bond_refined_d 0.028 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2606 Nucleic Acid Atoms Solvent Atoms 337 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHELXD phasing