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Crystal structure of bovine coupling Factor B bound with cadmium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 50% PPG 400, 100 mM Tris, pH 7.4-8.0, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.29 46.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.01 α = 90 b = 49.924 β = 109.58 c = 36.942 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 KOHZU: Double Crystal Si(111) 2007-05-12 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.0332 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 40 83.5 0.036 0.027 32.2 3.3 62817 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.14 11.3 0.304 0.279 1.84 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.15 30 58184 3104 93.28 0.1305 0.12918 0.135 0.15496 0.1564 RANDOM 10.965
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.02 -0.02 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.686 r_dihedral_angle_4_deg 19.905 r_sphericity_free 13.732 r_dihedral_angle_3_deg 11.811 r_scangle_it 6.928 r_dihedral_angle_1_deg 6.763 r_sphericity_bonded 5.978 r_scbond_it 5.125 r_mcangle_it 3.512 r_rigid_bond_restr 2.772
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.686 r_dihedral_angle_4_deg 19.905 r_sphericity_free 13.732 r_dihedral_angle_3_deg 11.811 r_scangle_it 6.928 r_dihedral_angle_1_deg 6.763 r_sphericity_bonded 5.978 r_scbond_it 5.125 r_mcangle_it 3.512 r_rigid_bond_restr 2.772 r_mcbond_it 2.548 r_angle_other_deg 2.393 r_angle_refined_deg 2.322 r_mcbond_other 1.219 r_chiral_restr 0.136 r_bond_refined_d 0.035 r_gen_planes_refined 0.015 r_gen_planes_other 0.006 r_bond_other_d 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1508 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 10
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection HKL-2000 data reduction HKL-2000 data scaling