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CRYSTAL STRUCTURE OF A PUTATIVE ISOMERASE OF THE SNOAL-LIKE FAMILY (ATU_0744) FROM AGROBACTERIUM TUMEFACIENS STR. C58 AT 2.70 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 277 5.0000% PEG-6000, 0.1M Citrate pH 4.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.63 66.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.57 α = 90 b = 119.57 β = 90 c = 94.49 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2008-06-27 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162,0.97968,0.97946 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 28.724 97.6 0.113 7.04 11229 -3 49.301
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 97.8 0.454 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.7 28.724 11216 542 98.41 0.233 0.231 0.2309 0.262 0.2679 RANDOM 23.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.15 0.3 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.058 r_dihedral_angle_4_deg 14.457 r_dihedral_angle_3_deg 13.911 r_dihedral_angle_1_deg 3.398 r_angle_refined_deg 1.652 r_scangle_it 1.301 r_mcangle_it 1.061 r_angle_other_deg 1.013 r_scbond_it 0.831 r_mcbond_it 0.772
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.058 r_dihedral_angle_4_deg 14.457 r_dihedral_angle_3_deg 13.911 r_dihedral_angle_1_deg 3.398 r_angle_refined_deg 1.652 r_scangle_it 1.301 r_mcangle_it 1.061 r_angle_other_deg 1.013 r_scbond_it 0.831 r_mcbond_it 0.772 r_symmetry_vdw_other 0.299 r_symmetry_vdw_refined 0.234 r_mcbond_other 0.227 r_nbd_refined 0.222 r_nbd_other 0.206 r_symmetry_hbond_refined 0.201 r_nbtor_refined 0.187 r_xyhbond_nbd_refined 0.156 r_nbtor_other 0.093 r_chiral_restr 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1828 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing