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Crystal Structure of B*4405 presenting a 10mer EBV epitope
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 Citrate, Ammonium Acetate, PEG 4000, pH 5.6, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 51.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.776 α = 90 b = 82.351 β = 90 c = 110.138 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 65.94 26691 26691
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 65.94 26691 26568 1344 95.94 0.197 0.197 0.193 0.1942 0.255 0.2462 RANDOM 29.388
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.78 -1.19 1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.698 r_dihedral_angle_4_deg 17.084 r_dihedral_angle_3_deg 14.761 r_dihedral_angle_1_deg 9.507 r_scangle_it 4.959 r_scbond_it 3.894 r_mcangle_it 2.624 r_mcbond_it 2.139 r_angle_refined_deg 1.435 r_angle_other_deg 0.907
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.698 r_dihedral_angle_4_deg 17.084 r_dihedral_angle_3_deg 14.761 r_dihedral_angle_1_deg 9.507 r_scangle_it 4.959 r_scbond_it 3.894 r_mcangle_it 2.624 r_mcbond_it 2.139 r_angle_refined_deg 1.435 r_angle_other_deg 0.907 r_mcbond_other 0.38 r_symmetry_vdw_other 0.224 r_nbd_other 0.196 r_nbd_refined 0.188 r_nbtor_refined 0.176 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.135 r_chiral_restr 0.102 r_symmetry_vdw_refined 0.089 r_nbtor_other 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3178 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 12
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling