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Crystal Structure of HLA-B*4403 presenting 10mer EBV antigen
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 Citrate, Ammonium Acetate, PEG 4000, pH 5.6, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.411 α = 90 b = 81.791 β = 90 c = 109.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 109.11 59003 59003
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 109.11 58846 2977 97.56 0.184 0.184 0.183 0.191 0.21 0.2164 RANDOM 21.014
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -0.2 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.214 r_dihedral_angle_4_deg 14.188 r_dihedral_angle_3_deg 11.879 r_dihedral_angle_1_deg 5.443 r_scangle_it 3.165 r_scbond_it 2.423 r_mcangle_it 1.68 r_mcbond_it 1.388 r_angle_refined_deg 1.119 r_angle_other_deg 0.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.214 r_dihedral_angle_4_deg 14.188 r_dihedral_angle_3_deg 11.879 r_dihedral_angle_1_deg 5.443 r_scangle_it 3.165 r_scbond_it 2.423 r_mcangle_it 1.68 r_mcbond_it 1.388 r_angle_refined_deg 1.119 r_angle_other_deg 0.802 r_mcbond_other 0.266 r_symmetry_vdw_other 0.247 r_nbd_other 0.192 r_nbd_refined 0.19 r_nbtor_refined 0.178 r_symmetry_vdw_refined 0.177 r_symmetry_hbond_refined 0.112 r_xyhbond_nbd_refined 0.097 r_nbtor_other 0.081 r_chiral_restr 0.076 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3175 Nucleic Acid Atoms Solvent Atoms 401 Heterogen Atoms 28
Software Software Software Name Purpose MOSFLM data reduction PHASER phasing REFMAC refinement PDB_EXTRACT data extraction