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Crystal Structure of B*4402 presenting a 10mer EBV epitope
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 Citrate, Ammonium Acetate, PEG 4000, pH 5.6, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.53 51.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.696 α = 90 b = 81.948 β = 90 c = 109.772 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2003-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.701 65.65 48249 45757
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.701 1.745
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.701 65.65 48249 45757 2452 94.57 0.21 0.208 0.2107 0.251 0.253 RANDOM 21.512
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 -0.99 1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.248 r_dihedral_angle_3_deg 14.53 r_dihedral_angle_4_deg 14.264 r_dihedral_angle_1_deg 5.801 r_scangle_it 1.836 r_scbond_it 1.382 r_angle_refined_deg 1.206 r_mcangle_it 0.966 r_mcbond_it 0.866 r_angle_other_deg 0.831
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.248 r_dihedral_angle_3_deg 14.53 r_dihedral_angle_4_deg 14.264 r_dihedral_angle_1_deg 5.801 r_scangle_it 1.836 r_scbond_it 1.382 r_angle_refined_deg 1.206 r_mcangle_it 0.966 r_mcbond_it 0.866 r_angle_other_deg 0.831 r_symmetry_vdw_other 0.296 r_nbd_other 0.195 r_nbd_refined 0.188 r_nbtor_refined 0.177 r_symmetry_vdw_refined 0.155 r_symmetry_hbond_refined 0.141 r_mcbond_other 0.141 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.081 r_nbtor_other 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3175 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms 48
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling