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Trypanosoma Cruzi Metallocarboxypeptidase 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K9X PDB ENTRY 1K9X
Crystallization Crystal Properties Matthews coefficient Solvent content 3.01 59.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.4 α = 90 b = 136.25 β = 103.06 c = 117.86 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 1.0 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 46.23 100 0.084 17.8 6.3 156037 31.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 100 0.574 4.1 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1K9X 2.1 46.23 147734 3915 100 0.18037 0.17928 0.1867 0.22114 0.2252 RANDOM 30.974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -1.47 -2.18 1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.177 r_dihedral_angle_4_deg 17.911 r_dihedral_angle_3_deg 15.569 r_dihedral_angle_1_deg 5.732 r_scangle_it 3.287 r_scbond_it 2.278 r_angle_refined_deg 1.48 r_mcangle_it 1.25 r_mcbond_it 1.08 r_angle_other_deg 0.969
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.177 r_dihedral_angle_4_deg 17.911 r_dihedral_angle_3_deg 15.569 r_dihedral_angle_1_deg 5.732 r_scangle_it 3.287 r_scbond_it 2.278 r_angle_refined_deg 1.48 r_mcangle_it 1.25 r_mcbond_it 1.08 r_angle_other_deg 0.969 r_symmetry_vdw_refined 0.298 r_symmetry_vdw_other 0.286 r_nbd_refined 0.211 r_mcbond_other 0.206 r_nbd_other 0.195 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.16 r_nbtor_other 0.09 r_chiral_restr 0.089 r_metal_ion_refined 0.02 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16009 Nucleic Acid Atoms Solvent Atoms 1120 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement ADSC data collection XDS data reduction SCALA data scaling AMoRE phasing