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Crystal structure of reduced DsbA1 from Neisseria meningitidis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 2.4 M Ammonium sulfate, 0.1 M Bicine pH 9.0 or 1.6 M Trisodium citrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.9 35.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.08 α = 90 b = 46.418 β = 90 c = 79.93 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors, horizontal focusing by sagitally curved 2nd crystal M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.97900 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 46 99.5 0.064 6.8 10.2 26907 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.58 97.4 0.241 3.1 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 20.54 25466 1342 99.45 0.18148 0.18148 0.1883 0.21064 0.222 RANDOM 12.808
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.02 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_4_deg 15.014 r_dihedral_angle_3_deg 11.921 r_dihedral_angle_1_deg 5.515 r_scangle_it 2.838 r_scbond_it 1.99 r_angle_refined_deg 1.214 r_mcangle_it 1.107 r_mcbond_it 0.933 r_angle_other_deg 0.854
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.808 r_dihedral_angle_4_deg 15.014 r_dihedral_angle_3_deg 11.921 r_dihedral_angle_1_deg 5.515 r_scangle_it 2.838 r_scbond_it 1.99 r_angle_refined_deg 1.214 r_mcangle_it 1.107 r_mcbond_it 0.933 r_angle_other_deg 0.854 r_symmetry_vdw_other 0.222 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.189 r_nbd_other 0.183 r_nbtor_refined 0.177 r_mcbond_other 0.165 r_xyhbond_nbd_refined 0.142 r_symmetry_hbond_refined 0.088 r_nbtor_other 0.086 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1532 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XNEMO data collection MOSFLM data reduction SCALA data scaling SHARP phasing