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Putative beta-phosphoglucomutase from Bacteroides vulgatus.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 297 0.1 M magnesium formate, 15% PEG-3350, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.23 44.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.247 α = 90 b = 100.161 β = 97.82 c = 38.991 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 2008-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9792 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 26.9 99.4 0.093 28.9 6.7 25739 25739 31.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.72 1.75 94.5 0.576 2.03 4.6 1296
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.72 26.9 25732 25732 1312 99.34 0.171 0.171 0.169 0.1675 0.212 0.2099 RANDOM 24.153
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 0.25 -0.43 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.24 r_dihedral_angle_4_deg 19.018 r_dihedral_angle_3_deg 15.305 r_dihedral_angle_1_deg 5.592 r_scangle_it 3.168 r_scbond_it 2.042 r_angle_refined_deg 1.477 r_mcangle_it 1.284 r_mcbond_it 0.808 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.24 r_dihedral_angle_4_deg 19.018 r_dihedral_angle_3_deg 15.305 r_dihedral_angle_1_deg 5.592 r_scangle_it 3.168 r_scbond_it 2.042 r_angle_refined_deg 1.477 r_mcangle_it 1.284 r_mcbond_it 0.808 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.233 r_symmetry_vdw_refined 0.211 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.106 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1896 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing