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Crystal structure of the postfusion form of baculovirus fusion protein GP64
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 10% PEG 6000, 100 mM citric acid, 200 mM potassium sodium tartrate, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.84 56.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.47 α = 90 b = 87.47 β = 90 c = 431.59 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-03-14 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.0039, 0.8856, 1.0714, 1.0711 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 50 97.3 0.11 16.3 6.8 13594 3.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.95 3.05 99.9 0.55 3.29 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.95 47.84 12936 657 97.3 0.22606 0.22398 0.2209 0.2696 0.2675 RANDOM 51.153
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 1 2 -3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.975 r_dihedral_angle_4_deg 22.621 r_dihedral_angle_3_deg 17.142 r_dihedral_angle_1_deg 6.618 r_scangle_it 1.274 r_angle_refined_deg 1.087 r_mcangle_it 0.774 r_scbond_it 0.724 r_mcbond_it 0.422 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.975 r_dihedral_angle_4_deg 22.621 r_dihedral_angle_3_deg 17.142 r_dihedral_angle_1_deg 6.618 r_scangle_it 1.274 r_angle_refined_deg 1.087 r_mcangle_it 0.774 r_scbond_it 0.724 r_mcbond_it 0.422 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.234 r_symmetry_hbond_refined 0.222 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.103 r_chiral_restr 0.074 r_metal_ion_refined 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3360 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement DNA data collection XDS data reduction XSCALE data scaling SHARP phasing