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Crystal structure of the IRRE protein, a central regulator of DNA damage repair in deinococcaceae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 281 20% PEG 3350, 0.2M Potassium Fluoride, pH 7.5, VAPOR DIFFUSION, temperature 281K
Crystal Properties Matthews coefficient Solvent content 2.25 45.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.053 α = 90 b = 52.813 β = 90 c = 64.91 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97930 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 100 0.129 11.2 9581 44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.74 100 0.43 11.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 20 9581 9097 456 99.99 0.21991 0.21825 0.2145 0.25415 0.2429 RANDOM 43.615
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.42 -1.52 -1.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.414 r_dihedral_angle_4_deg 18.485 r_dihedral_angle_3_deg 15.483 r_dihedral_angle_1_deg 4.3 r_mcangle_it 2.232 r_scangle_it 2.184 r_mcbond_it 1.614 r_scbond_it 1.561 r_angle_refined_deg 1.453 r_nbtor_refined 0.326
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.414 r_dihedral_angle_4_deg 18.485 r_dihedral_angle_3_deg 15.483 r_dihedral_angle_1_deg 4.3 r_mcangle_it 2.232 r_scangle_it 2.184 r_mcbond_it 1.614 r_scbond_it 1.561 r_angle_refined_deg 1.453 r_nbtor_refined 0.326 r_nbd_refined 0.274 r_symmetry_vdw_refined 0.253 r_xyhbond_nbd_refined 0.181 r_symmetry_hbond_refined 0.128 r_chiral_restr 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1873 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DNA data collection MOSFLM data reduction SCALA data scaling SHARP phasing