☰ Navigation Tabs
C_terminal domain of protein of unknown function AF_0924 from Archaeoglobus fulgidus.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 294 0.2 M calcium chloride, 25% PEG 5500 MME, 0.1 M Bis-Tris buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.55 51.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.413 α = 90 b = 65.413 β = 90 c = 76.582 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 50 99.9 0.063 13 27.6 12898 12898 46.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.97 100 0.881 4.18 23.3 634
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.94 33 12850 12850 626 99.95 0.171 0.171 0.169 0.1697 0.202 0.204 RANDOM 42.192
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.37 0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.592 r_dihedral_angle_4_deg 21.669 r_dihedral_angle_3_deg 17.244 r_dihedral_angle_1_deg 5.372 r_scangle_it 4.21 r_scbond_it 2.654 r_mcangle_it 1.719 r_angle_refined_deg 1.631 r_mcbond_it 1.055 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.592 r_dihedral_angle_4_deg 21.669 r_dihedral_angle_3_deg 17.244 r_dihedral_angle_1_deg 5.372 r_scangle_it 4.21 r_scbond_it 2.654 r_mcangle_it 1.719 r_angle_refined_deg 1.631 r_mcbond_it 1.055 r_nbtor_refined 0.312 r_nbd_refined 0.226 r_symmetry_vdw_refined 0.223 r_symmetry_metal_ion_refined 0.193 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.126 r_metal_ion_refined 0.079 r_symmetry_hbond_refined 0.078 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1003 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing